IL_6GZ3_207

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_207 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2818

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6GZ3|1|B1|U|566
6GZ3|1|B1|C|567
6GZ3|1|B1|C|568
6GZ3|1|B1|A|569
*
6GZ3|1|B1|U|581
6GZ3|1|B1|U|582
6GZ3|1|B1|A|583
6GZ3|1|B1|A|584

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BJ

Ribosomal protein S9 (Predicted)

Chain BY

ribosomal protein eS24