IL_6GZ3_208

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_208 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1786

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6GZ3|1|B1|A|599
6GZ3|1|B1|G|600
6GZ3|1|B1|G|601
6GZ3|1|B1|G|602
6GZ3|1|B1|C|603
6GZ3|1|B1|A|604
6GZ3|1|B1|A|605
6GZ3|1|B1|G|606
*
6GZ3|1|B1|C|636
6GZ3|1|B1|U|637

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BC

ribosomal protein uS5

Chain BJ

Ribosomal protein S9 (Predicted)

Chain Be

ribosomal protein eS30