IL_6GZ3_211

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_211 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.1828

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6GZ3|1|B1|C|663
6GZ3|1|B1|A|664
6GZ3|1|B1|G|665
*
6GZ3|1|B1|C|1162
6GZ3|1|B1|C|1163
6GZ3|1|B1|G|1164

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BC

ribosomal protein uS5

Chain BX

Ribosomal protein S23