IL_6GZ3_287

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAC*GUAA

Length

7 nucleotides

Bulged bases

6GZ3|1|B1|A|554

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_287 not in the Motif Atlas

Geometric match to IL_7ECK_013

Geometric discrepancy: 0.3927

The information below is about IL_7ECK_013

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6GZ3|1|B1|U|530
6GZ3|1|B1|A|531
6GZ3|1|B1|C|532
*
6GZ3|1|B1|G|552
6GZ3|1|B1|U|553
6GZ3|1|B1|A|554
6GZ3|1|B1|A|555

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain Be

ribosomal protein eS30