IL_6GZ3_288

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

6GZ3|1|B1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_288 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.4129

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6GZ3|1|B1|G|924
6GZ3|1|B1|G|925
6GZ3|1|B1|A|926
*
6GZ3|1|B1|U|1015
6GZ3|1|B1|U|1016
6GZ3|1|B1|U|1017
6GZ3|1|B1|U|1018

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BN

ribosomal protein uS15

Chain Bb

ribosomal protein eS27