IL_8P9A_418

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8P9A|1|sR|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8P9A|1|sR|G|868
8P9A|1|sR|A|869
8P9A|1|sR|C|870
*
8P9A|1|sR|G|957
8P9A|1|sR|U|958
8P9A|1|sR|U|959
8P9A|1|sR|U|960

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c3

40S ribosomal protein S13

Chain d7

40S ribosomal protein S27-A