IL_6GZ4_032

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCG*CCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_032 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2404

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6GZ4|1|A2|G|472
6GZ4|1|A2|G|473
6GZ4|1|A2|C|474
6GZ4|1|A2|G|475
*
6GZ4|1|A2|C|667
6GZ4|1|A2|C|668
6GZ4|1|A2|G|669
6GZ4|1|A2|C|670

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain At

ribosomal protein eL28