IL_6GZ4_040

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6GZ4|1|A2|A|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_040 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2893

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6GZ4|1|A2|G|502
6GZ4|1|A2|A|503
6GZ4|1|A2|U|504
*
6GZ4|1|A2|A|643
6GZ4|1|A2|C|644

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

ribosomal protein eL13

Chain Aa

ribosomal protein uL15