IL_6GZ4_059

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_059 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2449

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GZ4|1|A2|C|1413
6GZ4|1|A2|C|1414
6GZ4|1|A2|G|1415
6GZ4|1|A2|A|1416
6GZ4|1|A2|G|1417
*
6GZ4|1|A2|C|1432
6GZ4|1|A2|C|1433
6GZ4|1|A2|G|1434
6GZ4|1|A2|A|1435
6GZ4|1|A2|G|1436

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AQ

ribosomal protein eL18