IL_6GZ4_071

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUCGCCCACG*CG

Length

12 nucleotides

Bulged bases

6GZ4|1|A2|C|1680, 6GZ4|1|A2|C|1699, 6GZ4|1|A2|C|1700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|A2|C|1676
6GZ4|1|A2|U|1677
6GZ4|1|A2|C|1678
6GZ4|1|A2|G|1679
6GZ4|1|A2|C|1680
6GZ4|1|A2|C|1699
6GZ4|1|A2|C|1700
6GZ4|1|A2|A|1701
6GZ4|1|A2|C|1702
6GZ4|1|A2|G|1703
*
6GZ4|1|A2|C|1822
6GZ4|1|A2|G|1823

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AF

ribosomal protein uL30

Chain AQ

ribosomal protein eL18

Chain AT

ribosomal protein eL21

Chain Ab

ribosomal protein eL29