IL_6GZ4_076

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_076 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.1565

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6GZ4|1|A2|A|1728
6GZ4|1|A2|U|1729
6GZ4|1|A2|U|1730
6GZ4|1|A2|A|1731
*
6GZ4|1|A2|U|1763
6GZ4|1|A2|U|1764
6GZ4|1|A2|C|1765
6GZ4|1|A2|U|1766

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AD

ribosomal protein uL18

Chain AI

ribosomal protein uL16