IL_6GZ4_089

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6GZ4|1|A2|U|1928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_089 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.1991

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6GZ4|1|A2|G|1927
6GZ4|1|A2|U|1928
6GZ4|1|A2|G|1929
*
6GZ4|1|A2|C|2016
6GZ4|1|A2|C|2017

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AH

ribosomal protein uL6

Chain AI

ribosomal protein uL16

Chain AS

ribosomal protein eL20

Chain Am

ribosomal protein eL40