IL_6GZ4_109

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6GZ4|1|A2|U|2666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_109 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2177

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6GZ4|1|A2|C|2625
6GZ4|1|A2|A|2626
6GZ4|1|A2|G|2627
*
6GZ4|1|A2|C|2664
6GZ4|1|A2|G|2665
6GZ4|1|A2|U|2666
6GZ4|1|A2|G|2667

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Ag

ribosomal protein eL34