IL_6GZ4_136

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGUGUAGAAUAA*UACU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|A2|A|3925
6GZ4|1|A2|G|3926
6GZ4|1|A2|G|3927
6GZ4|1|A2|U|3928
6GZ4|1|A2|G|3929
6GZ4|1|A2|U|3930
6GZ4|1|A2|A|3931
6GZ4|1|A2|G|3932
6GZ4|1|A2|A|3933
6GZ4|1|A2|A|3934
6GZ4|1|A2|U|3935
6GZ4|1|A2|A|3936
6GZ4|1|A2|A|3937
*
6GZ4|1|A2|U|4025
6GZ4|1|A2|A|4026
6GZ4|1|A2|C|4027
6GZ4|1|A2|U|4028

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Au

ribosomal protein uL1

Chain Bw

Transfer RNA; tRNA