IL_6GZ4_153

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6GZ4|1|A2|A|4480, 6GZ4|1|A2|C|4481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_153 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.1414

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6GZ4|1|A2|C|4420
6GZ4|1|A2|U|4421
*
6GZ4|1|A2|A|4479
6GZ4|1|A2|A|4480
6GZ4|1|A2|C|4481
6GZ4|1|A2|G|4482

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AO

ribosomal protein uL13

Chain AV

ribosomal protein uL14