IL_6GZ4_177

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

6GZ4|1|A2|C|4971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_177 not in the Motif Atlas

Geometric match to IL_4WF9_035

Geometric discrepancy: 0.2656

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6GZ4|1|A2|G|4970
6GZ4|1|A2|C|4971
6GZ4|1|A2|A|4972
*
6GZ4|1|A2|U|4993
6GZ4|1|A2|C|4994

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AW

ribosomal protein eL24