IL_6GZ4_201

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6GZ4|1|B1|A|313

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_201 not in the Motif Atlas

Homologous match to IL_4V88_399

Geometric discrepancy: 0.4083

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6GZ4|1|B1|G|312
6GZ4|1|B1|A|313
6GZ4|1|B1|U|314
*
6GZ4|1|B1|A|336
6GZ4|1|B1|C|337

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BG

ribosomal protein eS6