IL_6GZ4_226

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6GZ4|1|B1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_226 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2621

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6GZ4|1|B1|G|925
6GZ4|1|B1|A|926
*
6GZ4|1|B1|U|1015
6GZ4|1|B1|U|1016
6GZ4|1|B1|U|1017

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BN

ribosomal protein uS15

Chain Bb

ribosomal protein eS27