IL_6GZ4_242

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_242 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.2575

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6GZ4|1|B1|G|1235
6GZ4|1|B1|G|1236
*
6GZ4|1|B1|C|1521
6GZ4|1|B1|A|1522
6GZ4|1|B1|C|1523

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BP

ribosomal protein uS19

Chain BS

ribosomal protein uS13

Chain BZ

ribosomal protein uS10

Chain Bv

Transfer RNA; tRNA

Chain Bw

Transfer RNA; tRNA