IL_6GZ4_251

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_251 not in the Motif Atlas

Homologous match to IL_4V88_454

Geometric discrepancy: 0.2112

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6GZ4|1|B1|C|1363
6GZ4|1|B1|U|1364
6GZ4|1|B1|G|1365
*
6GZ4|1|B1|C|1374
6GZ4|1|B1|G|1375

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

ribosomal protein uS2

Chain BR

ribosomal protein eS17

Chain Ba

ribosomal protein eS26