IL_6GZ4_256

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_256 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.122

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6GZ4|1|B1|A|1537
6GZ4|1|B1|C|1538
6GZ4|1|B1|U|1539
*
6GZ4|1|B1|A|1594
6GZ4|1|B1|U|1595
6GZ4|1|B1|U|1596

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BF

ribosomal protein uS7

Chain BS

ribosomal protein uS13

Chain BT

ribosomal protein eS19

Chain BZ

ribosomal protein uS10