IL_6GZ4_273

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGG*UUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ4_273 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2653

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6GZ4|1|A2|G|456
6GZ4|1|A2|A|457
6GZ4|1|A2|G|458
6GZ4|1|A2|G|459
*
6GZ4|1|A2|U|683
6GZ4|1|A2|U|684
6GZ4|1|A2|C|685
6GZ4|1|A2|C|686

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

ribosomal protein eL6

Chain At

ribosomal protein eL28