IL_6GZ5_005
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_005 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.2471
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6GZ5|1|A2|C|30
6GZ5|1|A2|U|31
6GZ5|1|A2|G|32
6GZ5|1|A2|A|33
6GZ5|1|A2|A|34
6GZ5|1|A2|U|35
6GZ5|1|A2|U|36
6GZ5|1|A2|U|37
*
6GZ5|1|A2|A|44
6GZ5|1|A2|U|45
6GZ5|1|A2|U|46
6GZ5|1|A2|A|47
6GZ5|1|A2|G|48
6GZ5|1|A2|U|49
6GZ5|1|A2|C|50
6GZ5|1|A2|A|51
6GZ5|1|A2|G|52
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AL
- ribosomal protein eL13
- Chain AN
- ribosomal protein eL15
- Chain Aa
- ribosomal protein uL15
- Chain Aj
- ribosomal protein eL37
- Chain Ao
- ribosomal protein eL42
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