IL_6GZ5_022

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

6GZ5|1|A2|A|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_022 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3318

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6GZ5|1|A2|G|437
6GZ5|1|A2|G|438
6GZ5|1|A2|U|439
6GZ5|1|A2|C|440
*
6GZ5|1|A2|G|1283
6GZ5|1|A2|C|1284
6GZ5|1|A2|U|1285
6GZ5|1|A2|A|1286
6GZ5|1|A2|C|1287

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Ae

ribosomal protein eL32

Chain Af

ribosomal protein eL33