IL_6GZ5_024

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGGA*UUUCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_024 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3309

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6GZ5|1|A2|G|456
6GZ5|1|A2|A|457
6GZ5|1|A2|G|458
6GZ5|1|A2|G|459
6GZ5|1|A2|A|460
*
6GZ5|1|A2|U|682
6GZ5|1|A2|U|683
6GZ5|1|A2|U|684
6GZ5|1|A2|C|685
6GZ5|1|A2|C|686

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

ribosomal protein eL6

Chain At

ribosomal protein eL28