IL_6GZ5_048

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCACG*CCGUCG

Length

11 nucleotides

Bulged bases

6GZ5|1|A2|U|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_048 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3228

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6GZ5|1|A2|C|1068
6GZ5|1|A2|C|1069
6GZ5|1|A2|A|1070
6GZ5|1|A2|C|1071
6GZ5|1|A2|G|1072
*
6GZ5|1|A2|C|1189
6GZ5|1|A2|C|1190
6GZ5|1|A2|G|1191
6GZ5|1|A2|U|1192
6GZ5|1|A2|C|1193
6GZ5|1|A2|G|1194

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AF

ribosomal protein uL30

Chain AT

ribosomal protein eL21