IL_6GZ5_054

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUC*GGGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_054 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3147

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GZ5|1|A2|G|1408
6GZ5|1|A2|G|1409
6GZ5|1|A2|A|1410
6GZ5|1|A2|U|1411
6GZ5|1|A2|C|1412
*
6GZ5|1|A2|G|1437
6GZ5|1|A2|G|1438
6GZ5|1|A2|G|1439
6GZ5|1|A2|C|1440
6GZ5|1|A2|A|1441
6GZ5|1|A2|C|1442

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AQ

ribosomal protein eL18

Chain Ab

ribosomal protein eL29