IL_6GZ5_079
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 6GZ5|1|A2|U|2051
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_079 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1538
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6GZ5|1|A2|U|1886
6GZ5|1|A2|U|1887
6GZ5|1|A2|A|1888
6GZ5|1|A2|A|1889
6GZ5|1|A2|G|1890
*
6GZ5|1|A2|C|2048
6GZ5|1|A2|C|2049
6GZ5|1|A2|A|2050
6GZ5|1|A2|U|2051
6GZ5|1|A2|A|2052
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- ribosomal protein uL30
- Chain AQ
- ribosomal protein eL18
- Chain Ae
- ribosomal protein eL32
- Chain Af
- ribosomal protein eL33
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