IL_6GZ5_080
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_080 not in the Motif Atlas
- Geometric match to IL_4WF9_037
- Geometric discrepancy: 0.1717
- The information below is about IL_4WF9_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
6GZ5|1|A2|C|1892
6GZ5|1|A2|G|1893
6GZ5|1|A2|C|1894
6GZ5|1|A2|C|1895
6GZ5|1|A2|C|1896
6GZ5|1|A2|G|1897
6GZ5|1|A2|A|1898
6GZ5|1|A2|U|1899
*
6GZ5|1|A2|G|2045
6GZ5|1|A2|G|2046
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AF
- ribosomal protein uL30
- Chain AO
- ribosomal protein uL13
- Chain AS
- ribosomal protein eL20
- Chain Af
- ribosomal protein eL33
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