IL_6GZ5_096

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_096 not in the Motif Atlas

Geometric match to IL_7A0S_046

Geometric discrepancy: 0.1337

The information below is about IL_7A0S_046

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6GZ5|1|A2|G|2385
6GZ5|1|A2|G|2386
6GZ5|1|A2|U|2387
6GZ5|1|A2|U|2388
*
6GZ5|1|A2|A|2762
6GZ5|1|A2|C|2763

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AX

ribosomal protein uL23

Chain Ag

ribosomal protein eL34

Chain Aj

ribosomal protein eL37

Chain Al

ribosomal protein eL39