IL_6GZ5_098
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 6GZ5|1|A2|A|2491, 6GZ5|1|A2|A|2492
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_098 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.0995
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6GZ5|1|A2|C|2425
6GZ5|1|A2|U|2426
6GZ5|1|A2|G|2427
6GZ5|1|A2|A|2428
6GZ5|1|A2|G|2429
*
6GZ5|1|A2|C|2488
6GZ5|1|A2|G|2489
6GZ5|1|A2|A|2490
6GZ5|1|A2|A|2491
6GZ5|1|A2|A|2492
6GZ5|1|A2|G|2493
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- ribosomal protein uL2
- Chain Ag
- ribosomal protein eL34
- Chain Aj
- ribosomal protein eL37
- Chain Al
- ribosomal protein eL39
Coloring options: