IL_6GZ5_100

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

6GZ5|1|A2|G|2523, 6GZ5|1|A2|U|2524, 6GZ5|1|A2|G|2525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_100 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.2823

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6GZ5|1|A2|G|2521
6GZ5|1|A2|A|2522
6GZ5|1|A2|G|2523
6GZ5|1|A2|U|2524
6GZ5|1|A2|G|2525
6GZ5|1|A2|G|2526
*
6GZ5|1|A2|C|2751
6GZ5|1|A2|G|2752
6GZ5|1|A2|C|2753

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Ak

ribosomal protein eL38