IL_6GZ5_112

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6GZ5|1|A2|U|2859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_112 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1103

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6GZ5|1|A2|C|2846
6GZ5|1|A2|G|2847
6GZ5|1|A2|U|2848
6GZ5|1|A2|A|2849
6GZ5|1|A2|A|2850
6GZ5|1|A2|C|2851
*
6GZ5|1|A2|G|2856
6GZ5|1|A2|G|2857
6GZ5|1|A2|A|2858
6GZ5|1|A2|U|2859
6GZ5|1|A2|A|2860
6GZ5|1|A2|A|2861
6GZ5|1|A2|G|2862

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain An

ribosomal protein eL41

Chain Ap

ribosomal protein eL43

Chain B1

Small subunit ribosomal RNA; SSU rRNA