3D structure

PDB id
6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UCAAAGU*AAUGAAG
Length
14 nucleotides
Bulged bases
6GZ5|1|A2|G|3706
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GZ5_120 not in the Motif Atlas
Homologous match to IL_8C3A_093
Geometric discrepancy: 0.2076
The information below is about IL_8C3A_093
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_36973.8
Basepair signature
cWW-tSH-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6GZ5|1|A2|U|3686
6GZ5|1|A2|C|3687
6GZ5|1|A2|A|3688
6GZ5|1|A2|A|3689
6GZ5|1|A2|A|3690
6GZ5|1|A2|G|3691
6GZ5|1|A2|U|3692
*
6GZ5|1|A2|A|3703
6GZ5|1|A2|A|3704
6GZ5|1|A2|U|3705
6GZ5|1|A2|G|3706
6GZ5|1|A2|A|3707
6GZ5|1|A2|A|3708
6GZ5|1|A2|G|3709

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AA
ribosomal protein uL2
Chain Ai
ribosomal protein eL36
Chain Bw
Transfer RNA; tRNA

Coloring options:


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