IL_6GZ5_132

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_132 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.2765

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

6GZ5|1|A2|G|3941
6GZ5|1|A2|G|3942
6GZ5|1|A2|A|3943
6GZ5|1|A2|G|3944
*
6GZ5|1|A2|C|4008
6GZ5|1|A2|G|4009
6GZ5|1|A2|C|4010
6GZ5|1|A2|C|4011
6GZ5|1|A2|G|4012
6GZ5|1|A2|G|4013
6GZ5|1|A2|U|4014
6GZ5|1|A2|G|4015
6GZ5|1|A2|A|4016
6GZ5|1|A2|A|4017
6GZ5|1|A2|A|4018
6GZ5|1|A2|U|4019
6GZ5|1|A2|A|4020
6GZ5|1|A2|C|4021

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Au

ribosomal protein uL1

Chain Bw

Transfer RNA; tRNA