IL_6GZ5_135

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCC*GGCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_135 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.377

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6GZ5|1|A2|G|4069
6GZ5|1|A2|C|4070
6GZ5|1|A2|C|4071
*
6GZ5|1|A2|G|4077
6GZ5|1|A2|G|4078
6GZ5|1|A2|C|4079
6GZ5|1|A2|U|4080

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AG

ribosomal protein eL8

Chain BB

ribosomal protein eS1