IL_6GZ5_143

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6GZ5|1|A2|U|4399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_143 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.1766

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6GZ5|1|A2|G|4367
6GZ5|1|A2|U|4368
6GZ5|1|A2|G|4369
*
6GZ5|1|A2|U|4397
6GZ5|1|A2|U|4398
6GZ5|1|A2|U|4399
6GZ5|1|A2|U|4400
6GZ5|1|A2|U|4401

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AI

ribosomal protein uL16