IL_6GZ5_159

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6GZ5|1|A2|A|4670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_159 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2126

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6GZ5|1|A2|G|4642
6GZ5|1|A2|A|4643
6GZ5|1|A2|U|4644
6GZ5|1|A2|U|4645
6GZ5|1|A2|A|4646
6GZ5|1|A2|U|4647
*
6GZ5|1|A2|A|4667
6GZ5|1|A2|G|4668
6GZ5|1|A2|A|4669
6GZ5|1|A2|A|4670
6GZ5|1|A2|U|4671
6GZ5|1|A2|C|4672

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

ribosomal protein uL6

Chain AO

ribosomal protein uL13

Chain Am

ribosomal protein eL40