IL_6GZ5_189

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUGGU*AACG

Length

10 nucleotides

Bulged bases

6GZ5|1|B1|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_189 not in the Motif Atlas

Homologous match to IL_8P9A_380

Geometric discrepancy: 0.5298

The information below is about IL_8P9A_380

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6GZ5|1|B1|U|110
6GZ5|1|B1|A|111
6GZ5|1|B1|U|112
6GZ5|1|B1|G|113
6GZ5|1|B1|G|114
6GZ5|1|B1|U|115
*
6GZ5|1|B1|A|348
6GZ5|1|B1|A|349
6GZ5|1|B1|C|350
6GZ5|1|B1|G|351

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BI

ribosomal protein eS8

Chain BL

ribosomal protein uS17