IL_6GZ5_198

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6GZ5|1|B1|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_198 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1788

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6GZ5|1|B1|G|411
6GZ5|1|B1|G|412
6GZ5|1|B1|G|413
*
6GZ5|1|B1|C|424
6GZ5|1|B1|G|425
6GZ5|1|B1|A|426
6GZ5|1|B1|U|427
6GZ5|1|B1|U|428
6GZ5|1|B1|C|429

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BJ

ribosomal protein uS4

Chain BX

ribosomal protein uS12