IL_6GZ5_206

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_206 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.1656

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6GZ5|1|B1|A|599
6GZ5|1|B1|G|600
6GZ5|1|B1|G|601
6GZ5|1|B1|G|602
6GZ5|1|B1|C|603
6GZ5|1|B1|A|604
6GZ5|1|B1|A|605
6GZ5|1|B1|G|606
*
6GZ5|1|B1|C|636
6GZ5|1|B1|U|637

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BC

ribosomal protein uS5

Chain BJ

ribosomal protein uS4

Chain Be

ribosomal protein eS30