IL_6GZ5_223

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6GZ5|1|B1|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_223 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1879

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6GZ5|1|B1|G|952
6GZ5|1|B1|C|953
6GZ5|1|B1|U|954
6GZ5|1|B1|A|955
6GZ5|1|B1|G|956
*
6GZ5|1|B1|C|967
6GZ5|1|B1|U|968
6GZ5|1|B1|U|969
6GZ5|1|B1|G|970
6GZ5|1|B1|G|971
6GZ5|1|B1|A|972
6GZ5|1|B1|C|973
6GZ5|1|B1|C|974

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BB

ribosomal protein eS1

Chain BO

ribosomal protein uS11