IL_6GZ5_230

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_230 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1231

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6GZ5|1|B1|G|1168
6GZ5|1|B1|G|1169
6GZ5|1|B1|A|1170
6GZ5|1|B1|G|1171
6GZ5|1|B1|U|1172
6GZ5|1|B1|A|1173
6GZ5|1|B1|U|1174
6GZ5|1|B1|G|1175
*
6GZ5|1|B1|U|1186
6GZ5|1|B1|G|1187
6GZ5|1|B1|A|1188
6GZ5|1|B1|A|1189
6GZ5|1|B1|A|1190
6GZ5|1|B1|C|1191

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain An

ribosomal protein eL41

Chain BX

ribosomal protein uS12