IL_6GZ5_241

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6GZ5|1|B1|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_241 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.2754

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6GZ5|1|B1|C|1337
6GZ5|1|B1|G|1338
*
6GZ5|1|B1|C|1488
6GZ5|1|B1|A|1489
6GZ5|1|B1|G|1490

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BC

ribosomal protein uS5

Chain BD

ribosomal protein uS3

Chain BQ

ribosomal protein uS9

Chain BU

ribosomal protein uS10

Chain Bd

ribosomal protein uS14

Chain Bx

mRNA