IL_6GZ5_256
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6GZ5|1|B1|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_256 not in the Motif Atlas
- Geometric match to IL_1CSL_001
- Geometric discrepancy: 0.362
- The information below is about IL_1CSL_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25872.4
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GZ5|1|B1|C|1708
6GZ5|1|B1|G|1709
6GZ5|1|B1|C|1710
6GZ5|1|B1|U|1711
*
6GZ5|1|B1|A|1822
6GZ5|1|B1|A|1823
6GZ5|1|B1|A|1824
6GZ5|1|B1|A|1825
6GZ5|1|B1|G|1826
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain BX
- ribosomal protein uS12
- Chain Bx
- mRNA
- Chain Ct
- eukaryotic elongation factor 2 (eEF2)
Coloring options: