IL_6GZ5_264

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCC*GAGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_264 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3452

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6GZ5|1|B1|C|1750
6GZ5|1|B1|C|1751
6GZ5|1|B1|C|1752
*
6GZ5|1|B1|G|1780
6GZ5|1|B1|A|1781
6GZ5|1|B1|G|1782
6GZ5|1|B1|C|1783
6GZ5|1|B1|G|1784

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AW

ribosomal protein eL24

Chain BG

ribosomal protein eS6