IL_6GZ5_270

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_270 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.302

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6GZ5|1|A2|G|1072
6GZ5|1|A2|G|1073
6GZ5|1|A2|C|1074
6GZ5|1|A2|G|1075
*
6GZ5|1|A2|C|1187
6GZ5|1|A2|G|1188
6GZ5|1|A2|C|1189

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AF

ribosomal protein uL30

Chain AT

ribosomal protein eL21