IL_6GZQ_004

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

6GZQ|1|A1|G|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_004 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.1929

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6GZQ|1|A1|G|80
6GZQ|1|A1|G|81
6GZQ|1|A1|G|82
6GZQ|1|A1|A|83
6GZQ|1|A1|G|84
*
6GZQ|1|A1|C|96
6GZQ|1|A1|G|97
6GZQ|1|A1|U|98
6GZQ|1|A1|G|99
6GZQ|1|A1|G|100
6GZQ|1|A1|A|101
6GZQ|1|A1|U|102
6GZQ|1|A1|C|103

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain T1

50S ribosomal protein L24

Chain X1

50S ribosomal protein L29