IL_6GZQ_009

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

6GZQ|1|A1|U|531, 6GZQ|1|A1|G|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_009 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.1486

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

6GZQ|1|A1|G|509
6GZQ|1|A1|A|510
6GZQ|1|A1|A|511
6GZQ|1|A1|C|512
*
6GZQ|1|A1|G|523
6GZQ|1|A1|A|524
6GZQ|1|A1|G|525
6GZQ|1|A1|U|526
6GZQ|1|A1|G|527
6GZQ|1|A1|A|528
6GZQ|1|A1|A|529
6GZQ|1|A1|A|530
6GZQ|1|A1|U|531
6GZQ|1|A1|A|532
6GZQ|1|A1|G|533
6GZQ|1|A1|A|534
6GZQ|1|A1|G|535
6GZQ|1|A1|C|536

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain R1

50S ribosomal protein L22

Chain T1

50S ribosomal protein L24