3D structure

PDB id
6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
6GZQ|1|A1|G|850, 6GZQ|1|A1|G|854
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GZQ_012 not in the Motif Atlas
Homologous match to IL_4WF9_021
Geometric discrepancy: 0.1311
The information below is about IL_4WF9_021
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

6GZQ|1|A1|G|723
6GZQ|1|A1|A|724
6GZQ|1|A1|A|725
6GZQ|1|A1|A|726
6GZQ|1|A1|C|727
*
6GZQ|1|A1|G|848
6GZQ|1|A1|A|849
6GZQ|1|A1|G|850
6GZQ|1|A1|A|851
6GZQ|1|A1|U|852
6GZQ|1|A1|A|853
6GZQ|1|A1|G|854
6GZQ|1|A1|C|855

Current chains

Chain A1
23S ribosomal RNA

Nearby chains

Chain E1
50S ribosomal protein L4
Chain K1
50S ribosomal protein L15

Coloring options:


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