IL_6GZQ_012
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6GZQ|1|A1|G|850, 6GZQ|1|A1|G|854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZQ_012 not in the Motif Atlas
- Homologous match to IL_4WF9_021
- Geometric discrepancy: 0.1311
- The information below is about IL_4WF9_021
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6GZQ|1|A1|G|723
6GZQ|1|A1|A|724
6GZQ|1|A1|A|725
6GZQ|1|A1|A|726
6GZQ|1|A1|C|727
*
6GZQ|1|A1|G|848
6GZQ|1|A1|A|849
6GZQ|1|A1|G|850
6GZQ|1|A1|A|851
6GZQ|1|A1|U|852
6GZQ|1|A1|A|853
6GZQ|1|A1|G|854
6GZQ|1|A1|C|855
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain E1
- 50S ribosomal protein L4
- Chain K1
- 50S ribosomal protein L15
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